Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNLVLLGGGYGNMRIMSRILTTSLPQDYTVTLVDRMPFHGLK-PEFYALAAGTKSDKDVRMKFPNHPQVNTVYG-EINDIDLDAQIVSVG-NSKIDYDELIIGLGCEDKYH-NVPGAEEYTHSIQTLSKARDTFHSISELPEGAKVGIVGAGLSGIELASELRESRSDLEIYLYDRGPRILRN-FPEKLSKYVAKWFAKNNVTVVPNSNINKVEPGKIYNC-DEPKDIDLVVWTAGIQPVEV-VRNLPIDINSNGRVIVNQYHQVPTYRNVYVVGDCADLPHA--------PSAQLAEVQGDQIADVLKKQWLNEPLPDKMPELKVQGIVGSLGDKQGFAYIMDRTVTGRLASILKSGVLWLYKYHNG |
2GQW Chain:A ((7-308)) | KAPVVVLGAGLASVSFVAELRQA--GYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGL---RPQSRLLIVGGGVIGLELAATARTA--GVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLAC--DDGIFVDAYGR-TTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDP--------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193231 for 2368 contacts (-81.6/contact) +
2D Compatibility (PS) -31545 + (NN) -16602 + (LL) 3788
1D Compatibility (HY) -15600 + (ID) 3000
Total energy: -256190.0 ( -108.19 by residue)
QMean score : 0.532
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