Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------------------------MRLQKAPLVTSGLVLGLLGLGNLLKD---------------LSLTLNAVCGIFAFLIWIHLLCTMIKY--FNNVKEQLNSPL---VSSVFTTFFMSGFLGTTYLNTFFSNITFINSL--------ITPIWILCLVGIMTHMIIFSIKY-LKDFSLENVY-PSWTVL------FIGIAIAGLTAPV-------------------SGCFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLILAQIFYFYIIIQLPKLLKE-PFSPVFSAFTFPLVISATALKNSL--PVLMFPDIWKG---LLFIEVLLATVIVLRVFIGYLHFFLKKENQDKFLRNASQ----------------------------- |
| 4US3 Chain:A ((10-450)) | GREQWASRLGFILAAMGSAVGLGNIWRFSYVTGENGGAAFLLVYLGFIALIGIPIVLAEFTIGRRAQSDAVGSFEKLAPGKPWKVAGLMGVAAGFLILSFYGVIAGWILFYLFNYITGQLWSAPAEGFGGFFEGFIANPTLPLFWQALFMIATIWIVAIGVKKGIERSNKILMPLLGVLLIALAIYSLTLGGAKEGLAFLFSPDWSALKDPGVYLAAISQAFFTLSLGMGALITYGSYVSKDSRLPGAAVSVAGLDTAFAIIAGIMIFPAVFA------LGLSPSGGPGLVFVVLPDIFDSIRLGPIVGIAFFILLGAAALSSAVSLLEVPVAYFMRKFDWSRKQAAITLGVIITLLGIPSSLSFGVLGEVTIIPGLNIFDSVDFIASSVFLPLGGMIIALFIGWGWKTSDALAESDLTDSVWGKLWILSLRFIAPIAILIVFLSAF |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4US3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -351350 for 2364 contacts (-148.6/contact) +
2D Compatibility (PS) -30855 + (NN) -10765 + (LL) 476
1D Compatibility (HY) -23600 + (ID) 2650
Total energy: -418744.0 ( -177.13 by residue)
QMean score : 0.263
|
|
|