Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
4WK6 Chain:D ((13-249))
----KVALVTGASRGIGKAIAELLAERGAKV-IGTATSESGAQAISDYL---GDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGIT---LLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVAS---------QANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMY-
General information:
TITO was launched using:
RESULT:
Template:
4WK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114821 for 1861 contacts (-61.7/contact) +
2D Compatibility (PS) -24041 + (NN) -4728 + (LL) 1084
1D Compatibility (HY) -19600 + (ID) 6150
Total energy: -168256.0 ( -90.41 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_4WK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WK6-query.scw
PDB file :
Tito_Scwrl_4WK6.pdb
: