Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTR--VILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNEDKQILERYKIGLKKG
4YVI Chain:B ((21-258))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQRKLLK---------
General information:
TITO was launched using:
RESULT:
Template:
4YVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124281 for 1694 contacts (-73.4/contact) +
2D Compatibility (PS) -25746 + (NN) -11891 + (LL) 420
1D Compatibility (HY) -23600 + (ID) 5350
Total energy: -190448.0 ( -112.43 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_4YVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVI-query.scw
PDB file :
Tito_Scwrl_4YVI.pdb
: