Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEIETIISEIEKLL--TNNTPYSISKNSGVPRQTVTDLKVGKTKIKEAKFKTIIKLYEYQRTLENKTEC
2KPJ Chain:A ((8-65))
----AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGI---AIPRMGKVQALADYFNINK-----
General information:
TITO was launched using:
RESULT:
Template:
2KPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2217 for 338 contacts (-6.6/contact) +
2D Compatibility (PS) -5732 + (NN) 572 + (LL) 952
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -10125.0 ( -29.96 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_2KPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPJ-query.scw
PDB file :
Tito_Scwrl_2KPJ.pdb
: