Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVD-ADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
1MQ0 Chain:B ((17-136))
-----------QEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYK--DFRAIAIASDMQDDFISPCGACRQVMREF-GTNWPVYMTKPDGTYIVMTVQELLPSSFGPEDL-
General information:
TITO was launched using:
RESULT:
Template:
1MQ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28198 for 892 contacts (-31.6/contact) +
2D Compatibility (PS) -13083 + (NN) -7275 + (LL) 784
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -62872.0 ( -70.48 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1MQ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MQ0-query.scw
PDB file :
Tito_Scwrl_1MQ0.pdb
: