Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
3BVZ Chain:A ((1-237))
---------------------------ESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYF-----------GKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
General information:
TITO was launched using:
RESULT:
Template:
3BVZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54071 for 1771 contacts (-30.5/contact) +
2D Compatibility (PS) -25310 + (NN) -17096 + (LL) 3376
1D Compatibility (HY) -31600 + (ID) 11400
Total energy: -136101.0 ( -76.85 by residue)
QMean score : 0.759
(partial model without unconserved sides chains):
PDB file :
Tito_3BVZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BVZ-query.scw
PDB file :
Tito_Scwrl_3BVZ.pdb
: