Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNQSYLNVYFICGTSDVPSHRTIHEVLEAALKAGITLFQFREKGESALKGNDKLVLAKELQHLCHQYDVPFIVNDDVSLAKEINADGIHVGQDDAKVKEIAQYFTDKIIGLSISDLDEYAKSDLTHVDYIGVGPIYPTPSKHDAHIPVGPEMIATFKEMNPQLPIVAIGGINTNNVAPIVEAGANGISVISAISKSENIEKTVNRFKDFFNN
1G4P Chain:B ((14-217))
---KELLSVYFIMGSNNTKADPVT--VVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVAAHTMSEVKQAEEDGADYVGLGPIYP-------RAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFRE----
General information:
TITO was launched using:
RESULT:
Template:
1G4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -158442 for 1675 contacts (-94.6/contact) +
2D Compatibility (PS) -22070 + (NN) -16662 + (LL) 572
1D Compatibility (HY) -14000 + (ID) 4200
Total energy: -214802.0 ( -128.24 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1G4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4P-query.scw
PDB file :
Tito_Scwrl_1G4P.pdb
: