Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
2EHJ Chain:D ((8-208))
--------HPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK
General information:
TITO was launched using:
RESULT:
Template:
2EHJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150524 for 1613 contacts (-93.3/contact) +
2D Compatibility (PS) -21331 + (NN) -2316 + (LL) 728
1D Compatibility (HY) -21200 + (ID) 5300
Total energy: -199943.0 ( -123.96 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_2EHJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EHJ-query.scw
PDB file :
Tito_Scwrl_2EHJ.pdb
: