Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGH-FAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
1VHW Chain:B ((4-233))
---ATPHINAQMGDFADVVLMPGDPLRAKYIAENFLDNAVQVCDVRNMFGYTGTYKGRRISVMGHGMGIPSCSIYVTELIKDYGVKKIIRVGSCGAVNEGIKVRDVVIGMGACTDSK-VNRIRFKDHDFAAIADYKMVKAAEEAAKARGIDVKVGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSDHIKTGEQTTSEERQNTFNEMIEIALD---
General information:
TITO was launched using:
RESULT:
Template:
1VHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142373 for 2024 contacts (-70.3/contact) +
2D Compatibility (PS) -24401 + (NN) -6486 + (LL) 868
1D Compatibility (HY) -24000 + (ID) 6200
Total energy: -202592.0 ( -100.09 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1VHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VHW-query.scw
PDB file :
Tito_Scwrl_1VHW.pdb
: