Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKELTMDGKHTVPYTISVDG-ITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKN---DDAKNSIDPSTIKQIQIVVK
1V1P Chain:B ((114-211))
--------------------------------------------TNTPLFVNKVNGEDLDASIDSFLIQKEEISLKELDFKIRQQLVNNYGLYKGT---SKYGKIIINLKDENKVEIDLGDKLQFERMGDVLNSKDIRGISVTIN
General information:
TITO was launched using:
RESULT:
Template:
1V1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31748 for 618 contacts (-51.4/contact) +
2D Compatibility (PS) -10418 + (NN) -2146 + (LL) 2600
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -46762.0 ( -75.67 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_1V1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V1P-query.scw
PDB file :
Tito_Scwrl_1V1P.pdb
: