Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQI----------NNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
1VJK Chain:A ((4-88))
VKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPPVS--
General information:
TITO was launched using:
RESULT:
Template:
1VJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43002 for 555 contacts (-77.5/contact) +
2D Compatibility (PS) -8235 + (NN) -2408 + (LL) -344
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -60539.0 ( -109.08 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1VJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJK-query.scw
PDB file :
Tito_Scwrl_1VJK.pdb
: