Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKFNVENEHVEVEIEKLYKFSPELVYEAWTKKDLLKQWFMTSA-RTNKEIEADVKEGGKYRIVDQQRN-G-KVNVIEGIYESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIETSTQQ
2LCG Chain:A ((2-135))
-----------NITVETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRME-AKDGSMGFDFAGTYTKVVENKRIEYAFGD-------RTAKVEFLEAPQG-VTVRVSFVA-ETEY--------------PVEQQQQGWQAILNNFKRHVESHL--
General information:
TITO was launched using:
RESULT:
Template:
2LCG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42014 for 927 contacts (-45.3/contact) +
2D Compatibility (PS) -14040 + (NN) -2437 + (LL) 2656
1D Compatibility (HY) -800 + (ID) 1200
Total energy: -57835.0 ( -62.39 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_2LCG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LCG-query.scw
PDB file :
Tito_Scwrl_2LCG.pdb
: