Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAEKWYDANFDQDLINERARAKDICFELNHTKPSDTNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFYHRNEGYEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK
4EGG Chain:D ((1-188))
MTEKEKMLAEKWYDANFDQTLINERLRAKVICFALNHTNPVATMMRKVLIDALFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDL-----------
General information:
TITO was launched using:
RESULT:
Template:
4EGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107980 for 1481 contacts (-72.9/contact) +
2D Compatibility (PS) -20886 + (NN) -14058 + (LL) 432
1D Compatibility (HY) -24800 + (ID) 8750
Total energy: -176042.0 ( -118.87 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_4EGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EGG-query.scw
PDB file :
Tito_Scwrl_4EGG.pdb
: