Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEKIALITGVTGQDGSYLAEYLLNLGYEVHGLKRRSSSINTSRIDHLYEDLHSEHKRRFFLHYGDMTDSSNLIHLIATTKPTEIYNLAAQSHVKVSFETPEYTANADGIGTLRILEAMRILGLEKKTRFYQASTSELYGEVLETPQNENTPFNPRSPYAVAKMYAFYITKNYREAYNLFAVNGILFNHESRVRGETFVTRKITRAASAIAYNLTDCLYLGNLDAKRDWGHAKDYVKMMHLMLQAPTPQDYVIATGKTTSVRDFVKMSFEFIGIDLEFQNTGIKEIGLIKSVDEKRANALQLNLSHLKTGKIVVRIDEHYFRPTEVDLLLGDPTGAEKELGWVREYDLKELVKDMLEYDLKECQKNLYLQDGGYTLRNFYE |
2Z1M Chain:D ((3-339)) | --GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL--GIENDVK---IIHM-DLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV--KPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPEPDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRN-----------------TGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2Z1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -139971 for 3038 contacts (-46.1/contact) +
2D Compatibility (PS) -35401 + (NN) -7659 + (LL) 2740
1D Compatibility (HY) -34400 + (ID) 9200
Total energy: -223891.0 ( -73.70 by residue)
QMean score : 0.471
|
|
|