Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANE-QHIALKEGVIASGDQFVHSKE-----RKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
3EEI Chain:B ((3-233))
LKTVAVIGAMEQEIELLREMME-NVKAVSFGRFSAYEGELAGKRMVLALSGIGKVNAAVATAWIIREFAADCVINTGSAGGLGKGLKVGDVVIGTETAHHDVDVTAFGYAWGQVPQLPARFASDGILIEAAKRAARTFEGAAVEQGLIVSGDRFVHSSEGVAEIRKHF--PEVK--AVEMEAAAIAQTCHQLETPFVIIRAVSDSADEKADISFDEFLKTAAANSAKMVAEIVKSL
General information:
TITO was launched using:
RESULT:
Template:
3EEI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159443 for 2030 contacts (-78.5/contact) +
2D Compatibility (PS) -23398 + (NN) -2667 + (LL) 676
1D Compatibility (HY) -17600 + (ID) 4300
Total energy: -206732.0 ( -101.84 by residue)
QMean score : 0.435
(partial model without unconserved sides chains):
PDB file :
Tito_3EEI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEI-query.scw
PDB file :
Tito_Scwrl_3EEI.pdb
: