Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYELVNQGSKK
1ZW2 Chain:B ((1-21))
----------------------------------------------ILEAAKSIAAATSALVKAASA-
General information:
TITO was launched using:
RESULT:
Template:
1ZW2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4126 for 75 contacts (55.0/contact) +
2D Compatibility (PS) -2321 + (NN) -1836 + (LL) 4844
1D Compatibility (HY) -800 + (ID) 350
Total energy: 3663.0 ( 48.84 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_1ZW2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZW2-query.scw
PDB file :
Tito_Scwrl_1ZW2.pdb
: