Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNRIIEHMNAHHVEDMKGLLKKFGQVHHAENVAFKSVDPQGIVIGYNNNQTLRIEFNHEVKDPKDYKNAIIELCQSVEKTHDLKGVEEEVKAFRKDFDSVCLATLHPNGHVVCSYAPLMTDGKQYYIYVSEVAEHFAGLKNNPHN-VEVMFLEDESKAKSAILRKRLRYKTNARFIERGAEFDKAFDSFIEKTGGAGGIKTIRTMQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFAHKK
3SWJ Chain:A ((2-250))
NFESIISHMNDHHKSNLVDLCKKFGGIEQVQ-VFLKSVDFNGLDLVY---ENLRVEFPKKA-DENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVALATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNP-NNIEIMFLEDESKAASVILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKGRFVKGFGQAYDIENGNVTHVGASGNPHKFLHKH
General information:
TITO was launched using:
RESULT:
Template:
3SWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123243 for 1687 contacts (-73.1/contact) +
2D Compatibility (PS) -26671 + (NN) -10815 + (LL) -212
1D Compatibility (HY) -25600 + (ID) 6650
Total energy: -193191.0 ( -114.52 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3SWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SWJ-query.scw
PDB file :
Tito_Scwrl_3SWJ.pdb
: