Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIWLLVWGLYSLAFLHAIETIEKAPTNVEDRDKAPHLLLLAGIQGDEPGGFNATNLFLMHYS------------VLKGLVEVVPVLNKPSMLRNHR-----------------GLYGDMNRKFAALDKND----------------PEYPTIQEIKSLIAKP-SVDAVLHLHDGGGYYRPVYIDAMLNPKRWGNCFIIDQDEVKGAKFPNLLAFANNTIENINAHLLHPIEKYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLESRVFYHLQAIEGLLNQLNIPFKRDFELNPNSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPSNTKIPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNETGYTIKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV |
| 1DTD Chain:A ((44-195)) | ---------------------------LKFSTGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSAGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLSRLHGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEHVRDHPY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -33324 for 670 contacts (-49.7/contact) +
2D Compatibility (PS) -11095 + (NN) -3562 + (LL) 16008
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -38123.0 ( -56.90 by residue)
QMean score : 0.387
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