Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNAHKERLESNLLELLQEALASLNDSELNSLSVTKVECSKGKHHALVFVLSSDHKILSKLKKAEGLIR---------QFVLQASGWF---KCPKLSFVLDDSLEKQLRLDAIFNEIAKGKDND
1LY7 Chain:A ((90-210))
--MDETTYERLAEETLDSLAEFFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLAAELTKALKTKLDLSSLAYSGKDA
General information:
TITO was launched using:
RESULT:
Template:
1LY7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16916 for 760 contacts (-22.3/contact) +
2D Compatibility (PS) -11800 + (NN) -2433 + (LL) 128
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -34971.0 ( -46.01 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1LY7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LY7-query.scw
PDB file :
Tito_Scwrl_1LY7.pdb
: