Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFEKKIPKEIAHALNDAPVDYVVVHGRTRSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNTT-----ELPAVVKKDLVLEHFDKMVEFYGD-RGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
1VHN Chain:A ((5-309)) | ------VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQK-TEELLPQPHERNVAVQIFGSEPNELSEAARIL-SE-KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGK-FSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTG-RAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEVE---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -128548 for 2583 contacts (-49.8/contact) +
2D Compatibility (PS) -31543 + (NN) -10555 + (LL) 2212
1D Compatibility (HY) -14400 + (ID) 4750
Total energy: -187584.0 ( -72.62 by residue)
QMean score : 0.482
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