Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFLSCKSLLIQRSLEFYLSDCLSPVEVCDLVLSDDEKLETNKPLCFIEERLRKPFTKQSVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
3HDG Chain:A ((104-130))
--------------------------------------------------LFLPKPIEPGRLMETLEDFRHIKLAKE-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3HDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4247 for 105 contacts (40.4/contact) +
2D Compatibility (PS) -2805 + (NN) -1312 + (LL) 7104
1D Compatibility (HY) -800 + (ID) 300
Total energy: 6134.0 ( 58.42 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_3HDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HDG-query.scw
PDB file :
Tito_Scwrl_3HDG.pdb
: