Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDANCLKLMFVAGSQDFYHIKGDRTNALLDTLELALQSKITAFQFRQKGDLALQDPVEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHVGQEDMAIEEVVTLCQKRLFIGLSVNTLEQALKARHLDHIAYLGVGPIFPTPSKKDAKEVVGVNLLKKIHDSGVEKPLIAIGGITTDNASKLQKFS--GIAVISAITQAKDKALAVEKLLKNA
1G4P Chain:B ((17-215))
------LSVYFIMGSNN---TKAD----PVTVVQKALKGGATLYQFREKGGDALTGEARIK-FAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGD-MILGVAAHTMSEVKQAEE-DGADYVGLGPIYP-------RAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEI
General information:
TITO was launched using:
RESULT:
Template:
1G4P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160582 for 1584 contacts (-101.4/contact) +
2D Compatibility (PS) -20673 + (NN) -13738 + (LL) 1324
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -209519.0 ( -132.27 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1G4P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4P-query.scw
PDB file :
Tito_Scwrl_1G4P.pdb
: