Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENFLYQLEIKTLGQVFTPKNIVDFMLILKH--NHGSVLEPSAGDGSFLKRLKKA-------VGIEIDPK---ICP-KNALCMDFFDYPLENQFNTIIGNPPYVKHKDIAPSTKEKLH------------YSLFDERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGDFSRITNDGLQFVCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNETYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNENNWFEWGRMHHISPKKRIYVNAKTHQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLN |
2IH2 Chain:D ((21-210)) | ---------------VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPY---GIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYY-LGE--VFPQKKVSAVVIRFQKSGKGLSLWDTQESESGFTPILWAEYPHWEGEIIRFETEETRKLEISGMPLGDLFHIRFAARSPEFKKHPAVRKEPGPGLVPVLTGRNLKPGWVDYEKNHSGLWMPKERAKELRDFYATPHLVVAHTKGTRVVAAWDERAYPWREEFHLLPKEGVRLDPSSLVQWLNSEAMQKHVRTLYRDFVPHLTLRMLERLPV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IH2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110541 for 1261 contacts (-87.7/contact) +
2D Compatibility (PS) -17928 + (NN) -8752 + (LL) 2064
1D Compatibility (HY) -15600 + (ID) 3200
Total energy: -153957.0 ( -122.09 by residue)
QMean score : 0.467
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