Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVI--DVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA
1DX9 Chain:B ((3-167))
--KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTANIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEFG
General information:
TITO was launched using:
RESULT:
Template:
1DX9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86062 for 1344 contacts (-64.0/contact) +
2D Compatibility (PS) -17663 + (NN) -10167 + (LL) 36
1D Compatibility (HY) -13600 + (ID) 3750
Total energy: -131206.0 ( -97.62 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1DX9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DX9-query.scw
PDB file :
Tito_Scwrl_1DX9.pdb
: