Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEGVLNFLTNINVIFTLLGYLIGGIPFGYALMKIFYGMDITKIGSGGI--GATNVLRALQSKGVSNAKQMALLVLILDLFKGMFAVFLSK----LFGLDYSLQWMVAIASILGHCYSPFLNFNGGKGVSTIMGSVVLLI--PIESLIGLTVWFFVGKVLKISSLASILGVGTATVLIFFVP---YMHIPDSVNILKEVGTQTPMVLIFIFTLIKHAGNIFNLLTGKEKKVL
4QDJ Chain:A ((2-230))
TNAALDDKTIVRDYFN---------STGFDRWRRIYGDGQVNFVQKDIRVGHQQTVDSVVAWLVADGNLPGLLVCDAGCGVGSLSIPLAQAGALVYGSDIS-------EKMVGEAQQKAQEVLAYGNQPTFMTQDLAQLGGKYDTVICLDVLIHYPTEEASAMISHLASLADRRLILSFAPKRAYQH--KEADIRKILGDNG--FSIARTGMTSTRFYYSRILEAVRS---
General information:
TITO was launched using:
RESULT:
Template:
4QDJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -196122 for 1588 contacts (-123.5/contact) +
2D Compatibility (PS) -20447 + (NN) 302 + (LL) 2276
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: -220791.0 ( -139.04 by residue)
QMean score : 0.159
(partial model without unconserved sides chains):
PDB file :
Tito_4QDJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QDJ-query.scw
PDB file :
Tito_Scwrl_4QDJ.pdb
: