Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFKGY----FDFWNC-AIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNA-GFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV
3U8U Chain:D ((62-317))
LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAP------SGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLA
General information:
TITO was launched using:
RESULT:
Template:
3U8U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148888 for 2051 contacts (-72.6/contact) +
2D Compatibility (PS) -26547 + (NN) -11809 + (LL) 396
1D Compatibility (HY) -24000 + (ID) 6100
Total energy: -216948.0 ( -105.78 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3U8U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U8U-query.scw
PDB file :
Tito_Scwrl_3U8U.pdb
: