Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGSNGIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNEMEKVALKTAVPAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVELPQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLA-QKGIKITAQMVPSEDAVEFANLLKK
3LFJ Chain:A ((-1-161))
-HMWKIVFARIDDRLIHGQVMTRWMKGFPEASIVIIDDELAVDEFMKNIYTMAAPPGVKVKVFGVDAALKEWSQKTSVEEKVFLLFKNIDTCKRVMDGGLPITTLNIGGVAKTPQRKGISQSVSLSEDEVKTLLELKTKYNVDVYLQMIPDSEKIHLTTVVEK
General information:
TITO was launched using:
RESULT:
Template:
3LFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112529 for 1247 contacts (-90.2/contact) +
2D Compatibility (PS) -17242 + (NN) -3010 + (LL) 208
1D Compatibility (HY) -16000 + (ID) 2100
Total energy: -150673.0 ( -120.83 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_3LFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LFJ-query.scw
PDB file :
Tito_Scwrl_3LFJ.pdb
: