Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSNFTAKVPLSERMADVLISKDRWKDDEEGYLKVKYGLEIILINVMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHAT---KTLNCTLISLLMFVLAPFVFQNIPSNNWIVLGTFGFILLNMFLFAPADTESLPLIGEEHRKTLKRKAMIGTLILTGIALLIPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE
4ZJF Chain:A ((12-172))
TLNMTMPLSCTKNNSHHYIMVGN-----------ETGLELTLTN--TSIINHKFCNLSDAHKKNLYDHALMSIISTFHLSIPNFNQYEAMSCDFNGGKISVQYNLSHSY-AGDAANHCGTVANGVLQTFMRMA--------WGGSYIALDSGR--------------------GNWDCIMTSYQYLIIQNTTWE----DHCQFSRPS
General information:
TITO was launched using:
RESULT:
Template:
4ZJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124023 for 1200 contacts (-103.4/contact) +
2D Compatibility (PS) -16322 + (NN) 2025 + (LL) 4380
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -136490.0 ( -113.74 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_4ZJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZJF-query.scw
PDB file :
Tito_Scwrl_4ZJF.pdb
: