Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRGQEEIDKEQYQVLFIKERLIPCVLGAVIGDCLGVP---VEFKDRE-YLKQNPIVEMIGYGTYNQPKGTWSDDSSLTFALMESLI-S-GY-DI----NRIVNNMVSFMDDGFWTPYGEVFDIGSVTRESLNRYKNGVSVFECGGKDNFDNGNGAIMRIMPLVFY-LG--KDFSFGKKN-KITEEVTRITHAHPRSILGSYVYIELLQNLFANMDKKLA---YEEMQNYIRKNYS-DYPFKDE-----------LQY---YNNILE----GNLYE----LKES-------NIKSS-GYVVDTLEASIWAFLT-TNSYKEAVLKAVNLGGDTDTIAFITGSLAGIYYKMEQIPVNWIDQIAKKEDILNLCNRFIESLIKQ |
| 3HFW Chain:A ((1-350)) | -----------------MEKYVAAMVLSAAGDALGYYNGKWEFLQDGEKIHR-QLAQLGGLDALDVGRWRVSDDTVMHLATAEALVEAGKAPKLTQLYYLLAKHYQDCMEDMD-----GRAPGGASVHNAMQ-LKPGKPNGWRIPFNSHEGGCGAAMRAMCIGLRFPHHSQ---L-DTLIQVSIESGRMTHHHPTGYLGALASALFTAYAVNSRPPLQWGKGLMELLPEAKKYIVQSGYFVEENLQHWSYFQTKWENYLKLRGILDGESAPTFPESFGVKERDQFYTSLSYSGWGGSSGHDAPMIAYDAVLAAGDSWKELAHRAFFHGGDSDSTAAIAGCWWGVMYGFKGVSPSNYEKLEYRNRLEETARALYSLGSK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HFW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165344 for 2745 contacts (-60.2/contact) +
2D Compatibility (PS) -31027 + (NN) -5284 + (LL) 1780
1D Compatibility (HY) -1600 + (ID) 2850
Total energy: -204325.0 ( -74.44 by residue)
QMean score : 0.393
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