Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIF------DGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNK-----AQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2XTY Chain:A ((14-213))
-----------------------RFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFM--------FCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKLDNYQASLLMERLGIAVI
General information:
TITO was launched using:
RESULT:
Template:
2XTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188568 for 1475 contacts (-127.8/contact) +
2D Compatibility (PS) -18010 + (NN) 6914 + (LL) 1492
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -206522.0 ( -140.01 by residue)
QMean score : 0.220
(partial model without unconserved sides chains):
PDB file :
Tito_2XTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XTY-query.scw
PDB file :
Tito_Scwrl_2XTY.pdb
: