Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFLEFHQLVKEDLLIYSWIIKNFHLTRQKLMAGGEITMNREQVIVMEKGLLVQV--NEEGKNDLYRVFIDQRIIFTTKGDI----TLTAL-EDTS-YSIIRTDELIGKLEDQHLLPTFFLQIAEDFEKGLDWQRT-LISVDPAERAE-MILVKIIE-RYEINSENKPEFPRWLRINVLARFAKCSVSTMSSVVNELVNEGDLNIKGTPWLLTRPYQASCA
4RFA Chain:A ((10-225))
EKLDTVLGYLKEFPDYYKYVTKKTYTLNEKIIFEDE---KAKSIFFIVEGYAAVELEDNLRKTNYISIFVLPYNVLGIDAFSSYPKHSITVMSESLMLYKIDADFLLNILSIKPDVNDFLLTSIADVFARHYALLGMIAK-TPKERIYMALENLAVEMGTEDEERNEIVLPNFINQSVLARYCRTTQPNISNLLTELVEEEFLINKKSPYRIDKDSLD---
General information:
TITO was launched using:
RESULT:
Template:
4RFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90401 for 1412 contacts (-64.0/contact) +
2D Compatibility (PS) -21397 + (NN) -3716 + (LL) 828
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -124036.0 ( -87.84 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_4RFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RFA-query.scw
PDB file :
Tito_Scwrl_4RFA.pdb
: