Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFNKKKTIASLIVLSSLASQIALTPISALADTHDTNNIALLQNTNENVPYKYTSTLTFPTLTNQTQEDYKLEIKLALPSGMNYTDLQVSVGGEDITNQVGTTSFDNSTNTVTFKFDKVTSWDSLSKAKVKFDWKTSYSGEGGEAKIDSLVATATATSEDKAGNKSTSTGSLKPKDISAPVVKAEETEITYSPGSDVTEEQFLTDIHASVTDNYDSTISLTSNFTSAVNLAVSGDYSVNVQATDKAGNVSNTLNVTVHVSTPAPVAGANITVNHLDSN--GNKIAESDTLTGVVNSNYQSESKKIT-GYTLETTPTNATGTFTDTPQTVDYIYKKDTVTPTPITVNPVEPVKPVNPVVNKPVTVKPANDNTNPSTSNSVEKTTYSSLPTTGDTDQSKSSTIFGALLLLISAPLLLFKKK |
| 2KYW Chain:A ((4-69)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DATITYVDDDKGGAQVGDIVTVTGKTDDSTTY-TVTIPDGYEYVGTDG---GVVSSDGKTVTITFAADDS--------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KYW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2921 for 343 contacts (-8.5/contact) +
2D Compatibility (PS) -6886 + (NN) -3757 + (LL) 17520
1D Compatibility (HY) -2000 + (ID) 700
Total energy: 1256.0 ( 3.66 by residue)
QMean score : 0.383
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