Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLFDTHVHLNDEAFD---DDIEEVIKRAQENDVTRMAVVGFNKETIDRALELAEKYDFISLIVGWHPTDAITFTDEDLEWLRDLALTHPKVVALGEMGLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEE-VG-GIMHCFGETVEVMEACLAMNFYISFGGTVTFKNAKLPKIAAQAIPIDRLLIETDAPYLAPTPNRGKRNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKRLFRIKD
1YIX Chain:A ((2-257))
FLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPSYLHMRDLVGERDNVVFSCGVHPLNQNDP--YDVEDLRRLA-AEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREE--KVTDCGGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHID-
General information:
TITO was launched using:
RESULT:
Template:
1YIX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151324 for 2230 contacts (-67.9/contact) +
2D Compatibility (PS) -27406 + (NN) -17115 + (LL) 264
1D Compatibility (HY) -18800 + (ID) 5100
Total energy: -219481.0 ( -98.42 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1YIX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIX-query.scw
PDB file :
Tito_Scwrl_1YIX.pdb
: