Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFGGRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTAVVIEAQDY
2Y1B Chain:A ((41-118))
-----AEELVGKP-FRDLGEVSGDSCQASNQ---------------------DSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTP-GCYRQAVCIGSALNIT----
General information:
TITO was launched using:
RESULT:
Template:
2Y1B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20016 for 527 contacts (-38.0/contact) +
2D Compatibility (PS) -8644 + (NN) -1800 + (LL) 1572
1D Compatibility (HY) 1200 + (ID) 750
Total energy: -28438.0 ( -53.96 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_2Y1B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y1B-query.scw
PDB file :
Tito_Scwrl_2Y1B.pdb
: