Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITFDQLDTELQALENPNTIKIFRNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVKLIESNNSDLIYLGLLAINPNKITTEQIEKWNIAFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNLPEAETLLQRAKETL--QTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLGNTACKVPDAISYIEKARNRTK |
2VGL Chain:A ((115-181)) | ---------------------------------------------------------------------------------------------------------------------AIKNDLASRNPTFMGLALHCIANVGS-REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -12615 for 441 contacts (-28.6/contact) +
2D Compatibility (PS) -6691 + (NN) 460 + (LL) 11436
1D Compatibility (HY) 0 + (ID) 350
Total energy: -7760.0 ( -17.60 by residue)
QMean score : 0.364
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