Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLA-AGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMERLQEWMEKALEIVEKGVETN
3N3W Chain:A ((34-142))
---------YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGD--------FILMSVAEENNGGKE----KPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKN-------
General information:
TITO was launched using:
RESULT:
Template:
3N3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43392 for 743 contacts (-58.4/contact) +
2D Compatibility (PS) -11839 + (NN) -6167 + (LL) 1808
1D Compatibility (HY) -4800 + (ID) 1100
Total energy: -65490.0 ( -88.14 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3N3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3W-query.scw
PDB file :
Tito_Scwrl_3N3W.pdb
: