Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTIQQLVKHVSVREFKNERLSDETKQHLLTAARSASSSHFVQSFSILEITDEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLEN----------------------NRTLDGLRNMESLLVSVIDATIAAQNMVIAAESLDLGICYIGGIRNDIGKVAELLNLPP-FTIPVFGLTVGVPEYKN----QVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWGDKNVEFFEEIRRPEIASFLKKQGFTLD
3OF4 Chain:A ((2-208))
-MYLEKLQQWRYATADFSGAHITDDVLDKLLNTTRLTASSYGLQPYCTLVIRNKGLREQLVNHSFGQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGI--EHDAYDNILSLKDLGLSTVFACPVGYRSEADTTQFQKKVRQPLSRFKVV--------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104533 for 1337 contacts (-78.2/contact) +
2D Compatibility (PS) -19940 + (NN) -12015 + (LL) 4512
1D Compatibility (HY) -6000 + (ID) 1750
Total energy: -139726.0 ( -104.51 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_3OF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OF4-query.scw
PDB file :
Tito_Scwrl_3OF4.pdb
: