Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIM--LVCNAGMSTG-MLAKKIEAAS---GNTLNVTAYSESEYTDYL-----DGVDLVLIGPQIRFLMPQIKQAVSVPVHAISPVKYGIMDGKGVYEDIQKLIGG
2KYR Chain:A ((3-105))
-KKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPE--DNERFESRDVYEITLQD-AIKNAAGIIKEIEEMIAS
General information:
TITO was launched using:
RESULT:
Template:
2KYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59474 for 695 contacts (-85.6/contact) +
2D Compatibility (PS) -9670 + (NN) -1222 + (LL) 368
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -74798.0 ( -107.62 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_2KYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KYR-query.scw
PDB file :
Tito_Scwrl_2KYR.pdb
: