Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKKRLLLASRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPNVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFE------LSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSL--T-LQESLDSNLHSGEKILLFTPCMDTM----LMQKVTRLTD-NKQ--LQIIT-FQSEHSKAMDAPAIFLEQASLLSRWERETK |
| 1YVR Chain:A ((366-503)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC-PITVNMLLHEVVEKMSD-ITMGSTDCALPMLWAQKTNTAADIFIVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTS--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YVR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -64161 for 937 contacts (-68.5/contact) +
2D Compatibility (PS) -13470 + (NN) -10522 + (LL) 20376
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -71577.0 ( -76.39 by residue)
QMean score : 0.476
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