Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDG-------DLQNMVVNIKLALPCDADQLD--EDTIRAIIPYG----------------TVTIEKMAGGMMTTS---GIFLEDKEDKNDLMYIVNASVETGY---------
3MVC Chain:A ((1-161))
LHLTQPQILFVRKTWN-HARNQGALEPAISIFRNSFFKN--PEIRQMIMFGTKNEGHERLKKHAQLFTVLMDDLIANLDSPSATVAGLREAGEKHVWPTRNQYGCPFHAHLLDQFATAMIERTLEWDRTETTQRGWTKIVLFVTEQLKEGFQDEQKRARR
General information:
TITO was launched using:
RESULT:
Template:
3MVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27389 for 808 contacts (-33.9/contact) +
2D Compatibility (PS) -12166 + (NN) -2930 + (LL) 372
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -49613.0 ( -61.40 by residue)
QMean score : 0.018
(partial model without unconserved sides chains):
PDB file :
Tito_3MVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MVC-query.scw
PDB file :
Tito_Scwrl_3MVC.pdb
: