Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDLFEADLPYYDVTMMSGLHKEAAGE---TLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNFSIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSLNYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF
3W79 Chain:D ((2-211))
-TKVLFITANPNSAEGSFGMAVGEAFIEAYKNEHPQDEVVTIDLFNTTVPAIDADVFAAWGKFAAGEGFEALTEVQQQKVAAMNTNLETFMNADRYVFVTPMWNFSYPPVVKAYLDNVAIAGKTFKYTENGPVGLLEGKKALHIQATGGVYSEGAYAAVDFGRNHLKTVLGFVGVNDTEYIAVEGMNANPEKAQEIKEAAIANARELAKRF
General information:
TITO was launched using:
RESULT:
Template:
3W79.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120672 for 1600 contacts (-75.4/contact) +
2D Compatibility (PS) -22295 + (NN) -11395 + (LL) 208
1D Compatibility (HY) -14400 + (ID) 4350
Total energy: -172904.0 ( -108.06 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3W79.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W79-query.scw
PDB file :
Tito_Scwrl_3W79.pdb
: