Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTMDPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIEIIKATREAIDKYDLKNVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDMKAAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTFAAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR |
4C5N Chain:D ((3-268)) | --LKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDT-WSHDVTPLPMDVFEKQLETALSIGP-DAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVC-------NPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIEH- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115136 for 2392 contacts (-48.1/contact) +
2D Compatibility (PS) -29842 + (NN) -19048 + (LL) 876
1D Compatibility (HY) -23600 + (ID) 7650
Total energy: -194400.0 ( -81.27 by residue)
QMean score : 0.589
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