Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
PRCPNLDEPTVGIDPELRKTIWEELDDLKANGKCILVTTHVMDEA-EKCDRLAMIRNGEIIAVGTPQELSSKTSSGKLEDAFLEFGGKH
4YMV Chain:A ((155-229))
PEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKN--------------
General information:
TITO was launched using:
RESULT:
Template:
4YMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9981 for 432 contacts (-23.1/contact) +
2D Compatibility (PS) -8283 + (NN) -5653 + (LL) 548
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -29819.0 ( -69.03 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_4YMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMV-query.scw
PDB file :
Tito_Scwrl_4YMV.pdb
: