Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQAIDAILGHYSVRKFEDKDLTEEALTLLIKSAQAASTSSFVQAYSIIGITDKDIREQISAIAGNQPYTVQTGQLFIFVADLARHHAILEEHQVDTAALETSEKWLVSVIDAALAAQNMAIAAESLGLGICFIGGIRNDVEQIAEILDLPPYTMPLFGLTIGHPVANKEKAKPRLPQDLVYHENSYKKMN---PETLAEYDKQIKTYYNERTAGKRVEGWSEQIAR-GLGRP---S-RLDLKAFLEKQHLNQK
3EOF Chain:A ((1-248))
--GMMDTVKNRRTIRKYQQKDITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPAHFNQPMVKEAPVVLTFCADFRRFCKYCQERNAVP-GYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPELVFPITTVTVGYPAES-PKQVDRLPIEGIIHEESYHDYTAEDINRLYAYKESLPENKLFIEEN-QKETLPQVFTDVRYTKKDNEFMSENLLKVLRRQGFMD-
General information:
TITO was launched using:
RESULT:
Template:
3EOF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112784 for 1747 contacts (-64.6/contact) +
2D Compatibility (PS) -26432 + (NN) -12540 + (LL) 464
1D Compatibility (HY) -12400 + (ID) 3000
Total energy: -166692.0 ( -95.42 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_3EOF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EOF-query.scw
PDB file :
Tito_Scwrl_3EOF.pdb
: