Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNN---NPDVIIRSLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK
1C0E Chain:B ((8-155))
---VLFVCLGNICRAPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRNHGIN-TAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSY-DPQKQLIIEDPYYGNDAD-FETVYQQCVRCCRAFLEK-
General information:
TITO was launched using:
RESULT:
Template:
1C0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59600 for 1204 contacts (-49.5/contact) +
2D Compatibility (PS) -16097 + (NN) -11342 + (LL) 884
1D Compatibility (HY) -13200 + (ID) 3000
Total energy: -102355.0 ( -85.01 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1C0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C0E-query.scw
PDB file :
Tito_Scwrl_1C0E.pdb
: