Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
3OJF Chain:C ((4-257))
----LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLERNVRELADTLE--GQESLVLPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISAFSLTAVAREAK--KVMTEGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQHGIRVNAISAGPIRTLSAKGVGDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGVTGENIHVDSGYHILGL
General information:
TITO was launched using:
RESULT:
Template:
3OJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188317 for 2149 contacts (-87.6/contact) +
2D Compatibility (PS) -27610 + (NN) -6529 + (LL) 792
1D Compatibility (HY) -28800 + (ID) 8100
Total energy: -258564.0 ( -120.32 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_3OJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OJF-query.scw
PDB file :
Tito_Scwrl_3OJF.pdb
: