Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKAC-EWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGL--HITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRN-LGKF-PLPLEVIPFGWKQVERKLEKEH----IQTNLRKQSSGEVYVTNNGNYILD-IVNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
2F8M Chain:B ((9-241))
MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKR-NGEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK
General information:
TITO was launched using:
RESULT:
Template:
2F8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102029 for 1837 contacts (-55.5/contact) +
2D Compatibility (PS) -24321 + (NN) -7870 + (LL) -28
1D Compatibility (HY) -22000 + (ID) 4300
Total energy: -160548.0 ( -87.40 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2F8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F8M-query.scw
PDB file :
Tito_Scwrl_2F8M.pdb
: