Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKKLDAKTASKTEIMQELRQL
3R8Y Chain:B ((5-217))
----DANEIISFIQKSEKKTPVKVYIKGDLKEVTFPETVQAFVNKKSGVLFGEWSEIKTILDENSKYIVDYVVENDRRNSAIPMLDLKGIKARIEPGAIIRDHVEIGDNAVIMMNATINIGAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGKGAVVAAGAVVTEDVPPYTVVAGTPARVIK-------------------
General information:
TITO was launched using:
RESULT:
Template:
3R8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -207516 for 1688 contacts (-122.9/contact) +
2D Compatibility (PS) -24154 + (NN) -13761 + (LL) 2608
1D Compatibility (HY) -28400 + (ID) 7500
Total energy: -278723.0 ( -165.12 by residue)
QMean score : 0.671
(partial model without unconserved sides chains):
PDB file :
Tito_3R8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R8Y-query.scw
PDB file :
Tito_Scwrl_3R8Y.pdb
: