Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDE-KDRLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1LQW Chain:B ((1-179))
MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDGSGKSYDYMLVNPKIVSHSVQEAYLPTGEGCLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNHP--LQPHTD---
General information:
TITO was launched using:
RESULT:
Template:
1LQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85304 for 1372 contacts (-62.2/contact) +
2D Compatibility (PS) -18776 + (NN) -7462 + (LL) 216
1D Compatibility (HY) -19600 + (ID) 5250
Total energy: -136176.0 ( -99.25 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_1LQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQW-query.scw
PDB file :
Tito_Scwrl_1LQW.pdb
: